Annotation of co-expression genes

PH01000141G1130's details annotation

1.Annotation

ICBR annotation: no apical meristem protein, putative, expressed

Blast result AT2G02450 : 2.30E-71
Blast annotation: NAC domain containing protein 35

2.Location

Scaffold: PH01000141
Strand: +

RegionStartEnd
gene703969707810
mRNA703969707810
exon703969704745
exon704889705147
exon705333705358
exon705705707810
CDS704499704745
CDS704889705147
CDS705333705358
CDS705705706318

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000903protein neddylation,
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Ubiquitin_mediated_proteolysis
cellular protein modification process,
NAC Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000904IWS1 Transcription_Regulator(from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
GPI anchor metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)NAC
Transcription_Regulator(from PlantTFDB)NAC

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02365.14NAM38162

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0006355regulation of transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.