Annotation of co-expression genes

PH01000141G1140's details annotation

1.Annotation

ICBR annotation: phosphoribosylformylglycinamidine synthase, putative, expressed

Blast result AT1G74260 : 0.00E+00
Blast annotation: purine biosynthesis 4

2.Location

Scaffold: PH01000141
Strand: -

RegionStartEnd
gene711016724081
mRNA711016724081
exon711016715782
exon715918715970
exon716959717011
exon717356717400
exon717649717719
exon719570719657
exon721878722026
exon722918724081
CDS711592715782
CDS715918715970
CDS716959717011
CDS717356717400
CDS717649717719
CDS719570719657
CDS721878722026
CDS722918723121

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02769.21AIRS_C740892
PF02769.21AIRS_C11501278
PF13507.5GATase_513471616

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Purine metabolismphosphoribosylformylglycinamidine synthase [EC:6.3.5.3]ko00230K01952

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004642phosphoribosylformylglycinamidine synthase activity
GO:0006189'de novo' IMP biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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