Annotation of co-expression genes

PH01000141G1230's details annotation

1.Annotation

ICBR annotation: calreticulin precursor protein, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000141
Strand: +

RegionStartEnd
gene794798797907
mRNA794798797907
exon794798795396
exon796156796237
exon796319796376
exon796565796607
exon797032797064
exon797162797907
CDS795338795396
CDS796156796237
CDS796319796376
CDS796565796607
CDS797032797064
CDS797162797207

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000251RLK-Pelle_LRR-XII-1 (from iTAK)
endoplasmic reticulum,
WRKY Transcription_Regulator(from PlantTFDB)
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen,
lipoxygenase activity,
protein binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00262.17Calreticulin2691

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005509calcium ion binding
GO:0005515protein binding
GO:0005783endoplasmic reticulum
GO:0006457protein folding
GO:0051082unfolded protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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