PH01000142G1080's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT1G73950 : 1.50E-53
Blast annotation: Transmembrane Fragile-X-F-associated protein
2.Location
Scaffold: PH01000142
Strand: +
| Region | Start | End |
| gene | 681358 | 685840 |
| mRNA | 681358 | 685840 |
| exon | 681358 | 681837 |
| exon | 682353 | 682443 |
| exon | 682539 | 682623 |
| exon | 682775 | 682859 |
| exon | 684305 | 684374 |
| exon | 684832 | 685840 |
| CDS | 681704 | 681837 |
| CDS | 682353 | 682443 |
| CDS | 682539 | 682623 |
| CDS | 682775 | 682859 |
| CDS | 684305 | 684374 |
| CDS | 684832 | 685128 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10269.8 | Tmemb_185A | 34 | 156 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.