PH01000143G0210's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000143
Strand: -
| Region | Start | End |
| gene | 155136 | 161008 |
| mRNA | 155136 | 161008 |
| exon | 155136 | 156627 |
| exon | 156744 | 156912 |
| exon | 157024 | 157173 |
| exon | 157960 | 159632 |
| exon | 160142 | 161008 |
| CDS | 155438 | 156627 |
| CDS | 156744 | 156912 |
| CDS | 157024 | 157173 |
| CDS | 157960 | 159632 |
| CDS | 160142 | 160394 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000569 | CMGC_Pl-Tthe (from iTAK) 1,3-beta-D-glucan synthase activity, 1,3-beta-D-glucan synthase complex, membrane, Regulation_of_autophagy |
| coexpression network | CFinderM001359 | CMGC_Pl-Tthe (from iTAK) Regulation_of_autophagy C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.