PH01000143G1560's details annotation
1.Annotation
ICBR annotation: methylthioribose kinase, putative, expressed
Blast result AT3G61080 : 5.00E-134
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000143
Strand: -
| Region | Start | End |
| gene | 929953 | 934994 |
| mRNA | 929953 | 934994 |
| exon | 929953 | 930947 |
| exon | 931633 | 931709 |
| exon | 931949 | 932089 |
| exon | 932259 | 932377 |
| exon | 932624 | 932712 |
| exon | 932794 | 932868 |
| exon | 933183 | 933273 |
| exon | 933378 | 933531 |
| exon | 933878 | 934994 |
| CDS | 930801 | 930947 |
| CDS | 931633 | 931709 |
| CDS | 931949 | 932089 |
| CDS | 932259 | 932377 |
| CDS | 932624 | 932712 |
| CDS | 932794 | 932868 |
| CDS | 933183 | 933273 |
| CDS | 933378 | 933531 |
| CDS | 933878 | 933983 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001007 | RLK-Pelle_LRR-Xa (from iTAK) Terpenoid_backbone_biosynthesis isopentenyl-diphosphate delta-isomerase activity, coproporphyrinogen oxidase activity, porphyrin-containing compound biosynthetic process, transferase activity, transferring phosphorus-containing groups, isoprenoid biosynthetic process, |
| coexpression network | CFinderM001008 | RLK-Pelle_LRR-Xa (from iTAK) porphobilinogen synthase activity, coproporphyrinogen oxidase activity, tetrapyrrole biosynthetic process, porphyrin-containing compound biosynthetic process, Porphyrin_and_chlorophyll_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03881.13 | Fructosamin_kin | 50 | 328 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.