Annotation of co-expression genes

PH01000144G0280's details annotation

1.Annotation

ICBR annotation: tubulin/FtsZ domain containing protein, putative, expressed

Blast result AT2G36250 : 6.00E-169
Blast annotation: Tubulin/FtsZ family protein

2.Location

Scaffold: PH01000144
Strand: +

RegionStartEnd
gene186145192983
mRNA186145192983
exon186145186726
exon187661187823
exon189049189651
exon189737190036
exon190172190262
exon190873190997
exon191692191784
exon191960192025
exon192100192983
CDS186503186726
CDS187661187823
CDS189049189651
CDS189737190036
CDS190172190262
CDS190873190997
CDS191692191784
CDS191960192025
CDS192100192213

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00091.24Tubulin239400
PF12327.7FtsZ_C450544

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0005737cytoplasm
GO:0006184GTP catabolic process
GO:0043234protein complex
GO:0051258protein polymerization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.