PH01000144G1220's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT2G16650 : 3.80E-95
Blast annotation: proteinaceous RNase P 2
2.Location
Scaffold: PH01000144
Strand: +
| Region | Start | End |
| gene | 710255 | 713047 |
| mRNA | 710255 | 713047 |
| exon | 710255 | 710919 |
| exon | 711045 | 711122 |
| exon | 711622 | 711723 |
| exon | 711824 | 711999 |
| exon | 712188 | 712308 |
| exon | 712508 | 712576 |
| exon | 712650 | 713047 |
| CDS | 710578 | 710919 |
| CDS | 711045 | 711122 |
| CDS | 711622 | 711723 |
| CDS | 711824 | 711999 |
| CDS | 712188 | 712308 |
| CDS | 712508 | 712576 |
| CDS | 712650 | 712880 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF17177.3 | PPR_long | 3 | 98 |
| PF16953.4 | PRORP | 114 | 311 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.