PH01000144G1350's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G19390 : 4.00E-102
Blast annotation: -
2.Location
Scaffold: PH01000144
Strand: +
| Region | Start | End |
| gene | 777122 | 786056 |
| mRNA | 777122 | 786056 |
| exon | 777122 | 777682 |
| exon | 777763 | 778000 |
| exon | 778615 | 778916 |
| exon | 779137 | 779313 |
| exon | 779547 | 780390 |
| exon | 780536 | 780632 |
| exon | 780717 | 780805 |
| exon | 781129 | 781794 |
| exon | 782718 | 782792 |
| exon | 783857 | 783927 |
| exon | 784013 | 784070 |
| exon | 784873 | 785071 |
| exon | 785187 | 785252 |
| exon | 785373 | 786056 |
| CDS | 777381 | 777682 |
| CDS | 777763 | 778000 |
| CDS | 778615 | 778916 |
| CDS | 779137 | 779313 |
| CDS | 779547 | 780390 |
| CDS | 780536 | 780632 |
| CDS | 780717 | 780805 |
| CDS | 781129 | 781794 |
| CDS | 782718 | 782792 |
| CDS | 783857 | 783927 |
| CDS | 784013 | 784070 |
| CDS | 784873 | 785071 |
| CDS | 785187 | 785252 |
| CDS | 785373 | 785857 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000149 | SET Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) GTnc GlycosylTransferases mitochondrial inner membrane, exocyst, |
| coexpression network | CFinderM000660 | Phagosome mitochondrial inner membrane, GTnc GlycosylTransferases |
| coexpression network | CFinderM000957 | DDT Transcription_Regulator(from iTAK) CMGC_CDK-PITSLRE (from iTAK) HB-HD-ZIP Transcription_Regulator(from iTAK) HD-ZIP Transcription_Regulator(from PlantTFDB) plant-type cell wall organization, Ether_lipid_metabolism Endocytosis Glycerophospholipid_metabolism extracellular region, |
| coexpression network | CFinderM001589 | PHD Transcription_Regulator(from iTAK) fructose-bisphosphate aldolase activity, glycolysis, |
| coexpression network | CFinderM001766 | proton-transporting ATP synthase complex, catalytic core F(1), mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), proton-transporting two-sector ATPase complex, catalytic domain, mitochondrial outer membrane, ATP metabolic process, anion transport, ATP biosynthetic process, ATP_catabolic_process regulation_of_anion_transport proton transport, ATP synthesis coupled proton transport, fructose-bisphosphate aldolase activity, voltage-gated anion channel activity, ATP hydrolysis coupled proton transport, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, hydrogen ion transporting ATP synthase activity, rotational mechanism, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.