Annotation of co-expression genes

PH01000144G1610's details annotation

1.Annotation

ICBR annotation: mitochondrial carrier protein, putative, expressed

Blast result AT5G42130 : 8.50E-87
Blast annotation: Mitochondrial substrate carrier family protein

2.Location

Scaffold: PH01000144
Strand: -

RegionStartEnd
gene969828973951
mRNA969828973951
exon969828971066
exon971362971459
exon972126973951
CDS969987971066
CDS971362971459
CDS972126972288

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001374Others Transcription_Regulator(from iTAK)
coexpression networkCFinderM001375nucleus,
Others Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
ubiquitin-dependent protein catabolic process,
regulation of transcription, DNA-dependent,
ubiquitin thiolesterase activity,
coexpression networkCFinderM001376cis-Golgi network,
cell communication,
phosphatidylinositol binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00153.26Mito_carr160239
PF00153.26Mito_carr250329
PF00153.26Mito_carr336423

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.