PH01000145G1020's details annotation
1.Annotation
ICBR annotation: L-aspartate oxidase 1, putative, expressed
Blast result AT5G14760 : 0.00E+00
Blast annotation: L-aspartate oxidase
2.Location
Scaffold: PH01000145
Strand: -
| Region | Start | End |
| gene | 712266 | 717371 |
| mRNA | 712266 | 717371 |
| exon | 712266 | 713625 |
| exon | 713851 | 713912 |
| exon | 714123 | 714203 |
| exon | 714330 | 714386 |
| exon | 714480 | 714529 |
| exon | 715041 | 715170 |
| exon | 715388 | 715630 |
| exon | 715723 | 716077 |
| exon | 716520 | 717371 |
| CDS | 712611 | 713625 |
| CDS | 713851 | 713912 |
| CDS | 714123 | 714203 |
| CDS | 714330 | 714386 |
| CDS | 714480 | 714529 |
| CDS | 715041 | 715170 |
| CDS | 715388 | 715630 |
| CDS | 715723 | 716077 |
| CDS | 716520 | 716650 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000036 | intrinsic to endoplasmic reticulum membrane, GT64 GlycosylTransferases Alanine,_aspartate_and_glutamate_metabolism Nicotinate_and_nicotinamide_metabolism Sphingolipid_metabolism transferase activity, transferring hexosyl groups, RLK-Pelle_LRR-XI-1 (from iTAK) |
| coexpression network | CFinderM000688 | GT64 GlycosylTransferases Alanine,_aspartate_and_glutamate_metabolism intrinsic to endoplasmic reticulum membrane, Nicotinate_and_nicotinamide_metabolism Terpenoid_backbone_biosynthesis regulation of ARF GTPase activity, isoprenoid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00890.23 | FAD_binding_2 | 88 | 532 |
| PF02910.19 | Succ_DH_flav_C | 588 | 674 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 254 Alanine, aspartate and glutamate metabolism | L-aspartate oxidase [EC:1.4.3.16] | K00278 | |
| Nicotinate and nicotinamide metabolism | L-aspartate oxidase [EC:1.4.3.16] | ko00760 | K00278 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.