PH01000146G1280's details annotation
1.Annotation
ICBR annotation: choline transporter-related, putative, expressed
Blast result AT1G25500 : 9.00E-103
Blast annotation: Plasma-membrane choline transporter family protein
2.Location
Scaffold: PH01000146
Strand: +
| Region | Start | End |
| gene | 884856 | 889688 |
| mRNA | 884856 | 889688 |
| exon | 884856 | 885440 |
| exon | 887279 | 887462 |
| exon | 887557 | 887781 |
| exon | 887917 | 888033 |
| exon | 888394 | 888627 |
| exon | 889316 | 889688 |
| CDS | 885217 | 885440 |
| CDS | 887279 | 887462 |
| CDS | 887557 | 887781 |
| CDS | 887917 | 888033 |
| CDS | 888394 | 888627 |
| CDS | 889316 | 889324 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04515.11 | Choline_transpo | 74 | 322 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.