Annotation of co-expression genes

PH01000148G1070's details annotation

1.Annotation

ICBR annotation: ZOS5-08 - C2H2 zinc finger protein, expressed

Blast result AT3G57670 : 2.20E-78
Blast annotation: C2H2-type zinc finger family protein

2.Location

Scaffold: PH01000148
Strand: -

RegionStartEnd
gene731861735282
mRNA731861735282
exon731861732473
exon734043735282
CDS732036732473
CDS734043734645

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000386C2H2 Transcription_Regulator(from PlantTFDB)
GH18 Glycoside_Hydrolases
protein neddylation,
Tify Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)C2H2
Transcription_Regulator(from PlantTFDB)C2H2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12874.6zf-met185204

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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