PH01000150G0870's details annotation
1.Annotation
ICBR annotation: polygalacturonase inhibitor 2 precursor, putative, expressed
Blast result AT3G12610 : 9.00E-112
Blast annotation: Leucine-rich repeat (LRR) family protein
2.Location
Scaffold: PH01000150
Strand: +
| Region | Start | End |
| gene | 570580 | 572924 |
| mRNA | 570580 | 572924 |
| exon | 570580 | 571595 |
| exon | 571649 | 572924 |
| CDS | 571120 | 571595 |
| CDS | 571649 | 572312 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000442 | GATA Transcription_Regulator(from PlantTFDB) C2C2-GATA Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VII-1 (from iTAK) positive_regulation_of_transcription,_DNA-templated |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 33 | 72 |
| PF13855.5 | LRR_8 | 142 | 197 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.