Annotation of co-expression genes

PH01000150G0990's details annotation

1.Annotation

ICBR annotation: AN1-like zinc finger domain containing protein, expressed

Blast result AT3G12630 : 7.90E-36
Blast annotation: A20/AN1-like zinc finger family protein

2.Location

Scaffold: PH01000150
Strand: -

RegionStartEnd
gene670491671249
mRNA670491671249
exon670491671249
CDS670615671118

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001393nuclear origin of replication recognition complex,
response to desiccation,
Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
protein dephosphorylation,
DNA_replication
coexpression networkCFinderM001416nuclear origin of replication recognition complex,
response to desiccation,
DNA binding,
Dof Transcription_Regulator(from PlantTFDB)
C2C2-Dof Transcription_Regulator(from iTAK)
DNA_replication
coexpression networkCFinderM001506chromosome, centromeric region,
mitosis,
helicase activity,
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01754.15zf-A202142
PF01428.15zf-AN1108145

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.