PH01000152G0320's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G19140 : 2.20E-17
Blast annotation: -
2.Location
Scaffold: PH01000152
Strand: -
| Region | Start | End |
| gene | 208285 | 212828 |
| mRNA | 208285 | 212828 |
| exon | 208285 | 209372 |
| exon | 209543 | 209547 |
| exon | 209582 | 209735 |
| exon | 211042 | 211195 |
| exon | 211611 | 211738 |
| exon | 211923 | 212005 |
| exon | 212406 | 212419 |
| exon | 212465 | 212828 |
| CDS | 209328 | 209372 |
| CDS | 209543 | 209547 |
| CDS | 209582 | 209735 |
| CDS | 211042 | 211195 |
| CDS | 211611 | 211738 |
| CDS | 211923 | 212005 |
| CDS | 212406 | 212419 |
| CDS | 212465 | 212493 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001349 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, cation-transporting_ATPase_activity cation transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0016021 | integral to membrane |
| GO:0019829 | cation-transporting ATPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.