PH01000152G0440's details annotation
1.Annotation
ICBR annotation: growth-regulating factor, putative, expressed
Blast result AT2G06200 : 1.60E-32
Blast annotation: growth-regulating factor 6
2.Location
Scaffold: PH01000152
Strand: -
| Region | Start | End |
| gene | 299152 | 308034 |
| mRNA | 299152 | 308034 |
| exon | 299152 | 299717 |
| exon | 300194 | 300207 |
| exon | 301003 | 301412 |
| exon | 302992 | 303391 |
| exon | 304049 | 304260 |
| exon | 306321 | 308034 |
| CDS | 299430 | 299717 |
| CDS | 300194 | 300207 |
| CDS | 301003 | 301412 |
| CDS | 302992 | 303391 |
| CDS | 304049 | 304260 |
| CDS | 306321 | 306403 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GRF |
| Transcription_Regulator(from PlantTFDB) | GRF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08880.10 | QLQ | 49 | 83 |
| PF08879.9 | WRC | 111 | 153 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.