PH01000152G0660's details annotation
1.Annotation
ICBR annotation: vacuolar ATPase G subunit, putative, expressed
Blast result AT3G01390 : 6.10E-31
Blast annotation: vacuolar membrane ATPase 10
2.Location
Scaffold: PH01000152
Strand: -
| Region | Start | End |
| gene | 433959 | 435300 |
| mRNA | 433959 | 435300 |
| exon | 433959 | 434330 |
| exon | 434410 | 434510 |
| exon | 435077 | 435300 |
| CDS | 434187 | 434330 |
| CDS | 434410 | 434510 |
| CDS | 435077 | 435164 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000685 | vacuolar proton-transporting V-type ATPase complex, prefoldin complex, RLK-Pelle_L-LEC (from iTAK) Phagosome Oxidative_phosphorylation proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03179.14 | V-ATPase_G | 6 | 109 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | V-type H+-transporting ATPase subunit G [EC:3.6.3.14] | ko00190 | K02152 |
| Phagosome | V-type H+-transporting ATPase subunit G [EC:3.6.3.14] | ko04145 | K02152 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015992 | proton transport |
| GO:0016471 | vacuolar proton-transporting V-type ATPase complex |
| GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.