PH01000152G0680's details annotation
1.Annotation
ICBR annotation: putrescine-binding periplasmic protein-related, putative, expressed
Blast result AT1G31410 : 5.00E-120
Blast annotation: putrescine-binding periplasmic protein-related
2.Location
Scaffold: PH01000152
Strand: -
| Region | Start | End |
| gene | 442323 | 447146 |
| mRNA | 442323 | 447146 |
| exon | 442323 | 443299 |
| exon | 443523 | 443684 |
| exon | 443873 | 444055 |
| exon | 444462 | 444638 |
| exon | 445013 | 445261 |
| exon | 445417 | 447146 |
| CDS | 442994 | 443299 |
| CDS | 443523 | 443684 |
| CDS | 443873 | 444055 |
| CDS | 444462 | 444638 |
| CDS | 445013 | 445261 |
| CDS | 445417 | 445887 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13343.5 | SBP_bac_6 | 201 | 415 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015846 | polyamine transport |
| GO:0019808 | polyamine binding |
| GO:0042597 | periplasmic space |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.