PH01000152G0730's details annotation
1.Annotation
ICBR annotation: pectinacetylesterase domain containing protein, expressed
Blast result AT4G19420 : 5.00E-121
Blast annotation: Pectinacetylesterase family protein
2.Location
Scaffold: PH01000152
Strand: +
| Region | Start | End |
| gene | 473485 | 479793 |
| mRNA | 473485 | 479793 |
| exon | 473485 | 474993 |
| exon | 475053 | 475169 |
| exon | 475881 | 475986 |
| exon | 476159 | 476258 |
| exon | 476735 | 476827 |
| exon | 476961 | 477043 |
| exon | 477150 | 477276 |
| exon | 477486 | 477565 |
| exon | 477641 | 477727 |
| exon | 478004 | 478128 |
| exon | 478321 | 478381 |
| exon | 478679 | 478756 |
| exon | 478913 | 478967 |
| exon | 479191 | 479336 |
| exon | 479483 | 479793 |
| CDS | 474608 | 474993 |
| CDS | 475053 | 475169 |
| CDS | 475881 | 475986 |
| CDS | 476159 | 476258 |
| CDS | 476735 | 476827 |
| CDS | 476961 | 477043 |
| CDS | 477150 | 477276 |
| CDS | 477486 | 477565 |
| CDS | 477641 | 477727 |
| CDS | 478004 | 478128 |
| CDS | 478321 | 478381 |
| CDS | 478679 | 478756 |
| CDS | 478913 | 478967 |
| CDS | 479191 | 479336 |
| CDS | 479483 | 479590 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Carbohydrate_Esterases | CE13 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03283.12 | PAE | 248 | 562 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.