PH01000152G0970's details annotation
1.Annotation
ICBR annotation: aldose 1-epimerase, putative, expressed
Blast result AT5G57330 : 4.00E-111
Blast annotation: Galactose mutarotase-like superfamily protein
2.Location
Scaffold: PH01000152
Strand: +
| Region | Start | End |
| gene | 597084 | 603792 |
| mRNA | 597084 | 603792 |
| exon | 597084 | 597463 |
| exon | 598965 | 599039 |
| exon | 599455 | 599511 |
| exon | 599601 | 599761 |
| exon | 599856 | 599996 |
| exon | 603004 | 603172 |
| exon | 603245 | 603344 |
| exon | 603446 | 603792 |
| CDS | 597326 | 597463 |
| CDS | 598965 | 599039 |
| CDS | 599455 | 599511 |
| CDS | 599601 | 599761 |
| CDS | 599856 | 599996 |
| CDS | 603004 | 603172 |
| CDS | 603245 | 603344 |
| CDS | 603446 | 603657 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000426 | nucleus, |
| coexpression network | CFinderM000555 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01263.19 | Aldose_epim | 3 | 220 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016853 | isomerase activity |
| GO:0030246 | carbohydrate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.