PH01000154G0440's details annotation
1.Annotation
ICBR annotation: ASC1, putative, expressed
Blast result AT3G19260 : 7.60E-95
Blast annotation: LAG1 homologue 2
2.Location
Scaffold: PH01000154
Strand: -
| Region | Start | End |
| gene | 276667 | 284174 |
| mRNA | 276667 | 284174 |
| exon | 276667 | 277065 |
| exon | 277871 | 278049 |
| exon | 278136 | 278321 |
| exon | 278938 | 279093 |
| exon | 280246 | 280454 |
| exon | 281409 | 284174 |
| CDS | 277046 | 277065 |
| CDS | 277871 | 278049 |
| CDS | 278136 | 278321 |
| CDS | 278938 | 279093 |
| CDS | 280246 | 280454 |
| CDS | 281409 | 281513 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03798.15 | TRAM_LAG1_CLN8 | 61 | 259 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.