PH01000154G0630's details annotation
1.Annotation
ICBR annotation: anthranilate synthase component I-1, chloroplast precursor, putative, expressed
Blast result AT5G05730 : 1.00E-171
Blast annotation: anthranilate synthase alpha subunit 1
2.Location
Scaffold: PH01000154
Strand: -
| Region | Start | End |
| gene | 389152 | 394243 |
| mRNA | 389152 | 394243 |
| exon | 389152 | 389601 |
| exon | 390154 | 390240 |
| exon | 390922 | 391002 |
| exon | 391211 | 391363 |
| exon | 391678 | 391758 |
| exon | 391986 | 392138 |
| exon | 392213 | 392269 |
| exon | 392508 | 392649 |
| exon | 392743 | 392858 |
| exon | 393297 | 393448 |
| exon | 393551 | 393740 |
| exon | 393839 | 394243 |
| CDS | 389275 | 389601 |
| CDS | 390154 | 390240 |
| CDS | 390922 | 391002 |
| CDS | 391211 | 391363 |
| CDS | 391678 | 391758 |
| CDS | 391986 | 392138 |
| CDS | 392213 | 392269 |
| CDS | 392508 | 392649 |
| CDS | 392743 | 392858 |
| CDS | 393297 | 393448 |
| CDS | 393551 | 393740 |
| CDS | 393839 | 394234 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001266 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis oxo-acid-lyase activity, AP2/ERF-ERF Transcription_Regulator(from iTAK) ERF Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04715.12 | Anth_synt_I_N | 95 | 250 |
| PF00425.17 | Chorismate_bind | 297 | 429 |
| PF00425.17 | Chorismate_bind | 430 | 625 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 419 Phenylalanine, tyrosine and tryptophan biosynthesis | anthranilate synthase component I [EC:4.1.3.27] | K01657 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009058 | biosynthetic process |
| GO:0016833 | oxo-acid-lyase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.