PH01000154G1020's details annotation
1.Annotation
ICBR annotation: SH3 domain containing protein, expressed
Blast result AT2G07360 : 0.00E+00
Blast annotation: SH3 domain-containing protein
2.Location
Scaffold: PH01000154
Strand: +
| Region | Start | End |
| gene | 622457 | 634975 |
| mRNA | 622457 | 634975 |
| exon | 622457 | 623220 |
| exon | 623547 | 623606 |
| exon | 623698 | 623790 |
| exon | 624100 | 624328 |
| exon | 624825 | 624931 |
| exon | 625082 | 625144 |
| exon | 625433 | 625533 |
| exon | 625912 | 626006 |
| exon | 626271 | 626291 |
| exon | 627454 | 627549 |
| exon | 627655 | 627775 |
| exon | 627879 | 628037 |
| exon | 628143 | 628333 |
| exon | 628678 | 628949 |
| exon | 629361 | 629462 |
| exon | 629711 | 629887 |
| exon | 629974 | 630162 |
| exon | 630287 | 630528 |
| exon | 630605 | 630751 |
| exon | 631638 | 631863 |
| exon | 632051 | 632182 |
| exon | 632276 | 632419 |
| exon | 633049 | 633228 |
| exon | 633586 | 633645 |
| exon | 633734 | 633793 |
| exon | 634079 | 634975 |
| CDS | 623176 | 623220 |
| CDS | 623547 | 623606 |
| CDS | 623698 | 623790 |
| CDS | 624100 | 624328 |
| CDS | 624825 | 624931 |
| CDS | 625082 | 625144 |
| CDS | 625433 | 625533 |
| CDS | 625912 | 626006 |
| CDS | 626271 | 626291 |
| CDS | 627454 | 627549 |
| CDS | 627655 | 627775 |
| CDS | 627879 | 628037 |
| CDS | 628143 | 628333 |
| CDS | 628678 | 628949 |
| CDS | 629361 | 629462 |
| CDS | 629711 | 629887 |
| CDS | 629974 | 630162 |
| CDS | 630287 | 630528 |
| CDS | 630605 | 630751 |
| CDS | 631638 | 631863 |
| CDS | 632051 | 632182 |
| CDS | 632276 | 632419 |
| CDS | 633049 | 633228 |
| CDS | 633586 | 633645 |
| CDS | 633734 | 633793 |
| CDS | 634079 | 634123 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001150 | CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases nucleosome, |
| coexpression network | CFinderM001418 | membrane, proton transport, Ether_lipid_metabolism inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity, Glycerophospholipid_metabolism Oxidative_phosphorylation |
| coexpression network | CFinderM001651 | clathrin adaptor complex, COPI vesicle coat, retrograde vesicle-mediated transport, Golgi to ER, inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity, Ether_lipid_metabolism proton transport, Glycerophospholipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00018.27 | SH3_1 | 1052 | 1093 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.