PH01000154G1520's details annotation
1.Annotation
ICBR annotation: Ser/Thr protein phosphatase family protein, putative, expressed
Blast result AT2G39840 : 3.00E-132
Blast annotation: type one serine/threonine protein phosphatase 4
2.Location
Scaffold: PH01000154
Strand: +
| Region | Start | End |
| gene | 959474 | 963749 |
| mRNA | 959474 | 963749 |
| exon | 959474 | 960857 |
| exon | 962364 | 962929 |
| exon | 963496 | 963749 |
| CDS | 960647 | 960857 |
| CDS | 962364 | 962929 |
| CDS | 963496 | 963603 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001162 | clathrin_coat_assembly clathrin_coat RLK-Pelle_SD-2b (from iTAK) |
| coexpression network | CFinderM001862 | clathrin_coat clathrin_coat_assembly 1-phosphatidylinositol_binding clathrin_binding cellular metabolic process, phospholipid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16891.4 | STPPase_N | 17 | 64 |
| PF00149.27 | Metallophos | 66 | 259 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.