PH01000157G0610's details annotation
1.Annotation
ICBR annotation: DENN domain containing protein, expressed
Blast result AT2G20320 : 2.00E-100
Blast annotation: DENN (AEX-3) domain-containing protein
2.Location
Scaffold: PH01000157
Strand: +
| Region | Start | End |
| gene | 424448 | 432677 |
| mRNA | 424448 | 432677 |
| exon | 424448 | 425484 |
| exon | 426880 | 427077 |
| exon | 428125 | 428208 |
| exon | 429226 | 429285 |
| exon | 430211 | 430255 |
| exon | 430686 | 431173 |
| exon | 431398 | 431494 |
| exon | 431571 | 431762 |
| exon | 431839 | 431928 |
| exon | 432191 | 432253 |
| exon | 432356 | 432430 |
| exon | 432486 | 432677 |
| CDS | 424759 | 425484 |
| CDS | 426880 | 427077 |
| CDS | 428125 | 428208 |
| CDS | 429226 | 429285 |
| CDS | 430211 | 430255 |
| CDS | 430686 | 431173 |
| CDS | 431398 | 431494 |
| CDS | 431571 | 431762 |
| CDS | 431839 | 431928 |
| CDS | 432191 | 432253 |
| CDS | 432356 | 432430 |
| CDS | 432486 | 432647 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02141.20 | DENN | 645 | 706 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.