PH01000158G0060's details annotation
1.Annotation
ICBR annotation: von Willebrand factor type A domain containing protein, expressed
Blast result AT1G19110 : 8.00E-129
Blast annotation: inter-alpha-trypsin inhibitor heavy chain-related
2.Location
Scaffold: PH01000158
Strand: +
| Region | Start | End |
| gene | 36916 | 42483 |
| mRNA | 36916 | 42483 |
| exon | 36916 | 37429 |
| exon | 37974 | 38058 |
| exon | 39451 | 39587 |
| exon | 39686 | 39898 |
| exon | 40012 | 40101 |
| exon | 40609 | 40722 |
| exon | 41126 | 41395 |
| exon | 41499 | 41655 |
| exon | 41980 | 42057 |
| exon | 42341 | 42483 |
| CDS | 37142 | 37429 |
| CDS | 37974 | 38058 |
| CDS | 39451 | 39587 |
| CDS | 39686 | 39898 |
| CDS | 40012 | 40101 |
| CDS | 40609 | 40722 |
| CDS | 41126 | 41395 |
| CDS | 41499 | 41655 |
| CDS | 41980 | 42057 |
| CDS | 42341 | 42411 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13768.5 | VWA_3 | 314 | 472 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.