PH01000158G0210's details annotation
1.Annotation
ICBR annotation: zinc-finger protein, putative, expressed
Blast result AT1G19180 : 2.90E-22
Blast annotation: jasmonate-zim-domain protein 1
2.Location
Scaffold: PH01000158
Strand: +
| Region | Start | End |
| gene | 148835 | 151157 |
| mRNA | 148835 | 151157 |
| exon | 148835 | 149482 |
| exon | 149619 | 149748 |
| exon | 150433 | 150689 |
| exon | 150794 | 150851 |
| exon | 150944 | 151157 |
| CDS | 149362 | 149482 |
| CDS | 149619 | 149748 |
| CDS | 150433 | 150689 |
| CDS | 150794 | 150851 |
| CDS | 150944 | 151085 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Tify |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06200.13 | tify | 89 | 121 |
| PF09425.9 | CCT_2 | 172 | 197 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.