PH01000158G0640's details annotation
1.Annotation
ICBR annotation: sucrose synthase, putative, expressed
Blast result AT3G43190 : 2.10E-65
Blast annotation: sucrose synthase 4
2.Location
Scaffold: PH01000158
Strand: +
| Region | Start | End |
| gene | 444671 | 446999 |
| mRNA | 444671 | 446999 |
| exon | 444671 | 444867 |
| exon | 445727 | 445856 |
| exon | 445951 | 446102 |
| exon | 446199 | 446391 |
| exon | 446896 | 446999 |
| CDS | 444824 | 444867 |
| CDS | 445727 | 445856 |
| CDS | 445951 | 446102 |
| CDS | 446199 | 446391 |
| CDS | 446896 | 446973 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00862.18 | Sucrose_synth | 10 | 198 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005985 | sucrose metabolic process |
| GO:0016157 | sucrose synthase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.