PH01000158G1410's details annotation
1.Annotation
ICBR annotation: ADP-ribosylation factor, putative, expressed
Blast result AT5G52210 : 1.20E-75
Blast annotation: GTP-binding protein 1
2.Location
Scaffold: PH01000158
Strand: -
| Region | Start | End |
| gene | 948351 | 953279 |
| mRNA | 948351 | 953279 |
| exon | 948351 | 948574 |
| exon | 948857 | 948960 |
| exon | 949345 | 949412 |
| exon | 949558 | 949666 |
| exon | 950436 | 950576 |
| exon | 950973 | 953279 |
| CDS | 948472 | 948574 |
| CDS | 948857 | 948960 |
| CDS | 949345 | 949412 |
| CDS | 949558 | 949666 |
| CDS | 950436 | 950576 |
| CDS | 950973 | 951065 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00025.20 | Arf | 10 | 185 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
| GO:0007264 | small GTPase mediated signal transduction |
| GO:0015031 | protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.