PH01000161G0060's details annotation
1.Annotation
ICBR annotation: ADP-ribosylation factor, putative, expressed
Blast result AT2G24765 : 6.60E-96
Blast annotation: ADP-ribosylation factor 3
2.Location
Scaffold: PH01000161
Strand: +
| Region | Start | End |
| gene | 52211 | 61369 |
| mRNA | 52211 | 61369 |
| exon | 52211 | 55495 |
| exon | 55747 | 55809 |
| exon | 57606 | 57624 |
| exon | 58571 | 58682 |
| exon | 59436 | 59483 |
| exon | 59939 | 60069 |
| exon | 60345 | 61369 |
| CDS | 55393 | 55495 |
| CDS | 55747 | 55809 |
| CDS | 57606 | 57624 |
| CDS | 58571 | 58682 |
| CDS | 59436 | 59483 |
| CDS | 59939 | 60069 |
| CDS | 60345 | 60378 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001232 | intracellular protein transport, small GTPase mediated signal transduction, GTP binding, intracellular, membrane coat, endoplasmic reticulum, protein transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00025.20 | Arf | 6 | 176 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
| GO:0007264 | small GTPase mediated signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.