PH01000161G0800's details annotation
1.Annotation
ICBR annotation: ubiquitin family protein, putative, expressed
Blast result AT5G42220 : 2.10E-35
Blast annotation: Ubiquitin-like superfamily protein
2.Location
Scaffold: PH01000161
Strand: -
| Region | Start | End |
| gene | 606736 | 618840 |
| mRNA | 606736 | 618840 |
| exon | 606736 | 608031 |
| exon | 608469 | 608624 |
| exon | 608976 | 609578 |
| exon | 609735 | 610063 |
| exon | 610164 | 610748 |
| exon | 611540 | 611660 |
| exon | 611753 | 611824 |
| exon | 611909 | 612073 |
| exon | 612886 | 613034 |
| exon | 613117 | 613186 |
| exon | 613268 | 613414 |
| exon | 613494 | 613562 |
| exon | 613661 | 613711 |
| exon | 614527 | 614577 |
| exon | 615602 | 615731 |
| exon | 618148 | 618840 |
| CDS | 607957 | 608031 |
| CDS | 608469 | 608624 |
| CDS | 608976 | 609578 |
| CDS | 609735 | 610063 |
| CDS | 610164 | 610748 |
| CDS | 611540 | 611660 |
| CDS | 611753 | 611824 |
| CDS | 611909 | 612073 |
| CDS | 612886 | 613034 |
| CDS | 613117 | 613186 |
| CDS | 613268 | 613414 |
| CDS | 613494 | 613562 |
| CDS | 613661 | 613711 |
| CDS | 614527 | 614577 |
| CDS | 615602 | 615731 |
| CDS | 618148 | 618353 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001731 | Peroxisome Fatty_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.