Annotation of co-expression genes

PH01000161G1020's details annotation

1.Annotation

ICBR annotation: radical SAM enzyme, putative, expressed

Blast result AT2G43360 : 5.00E-148
Blast annotation: Radical SAM superfamily protein

2.Location

Scaffold: PH01000161
Strand: -

RegionStartEnd
gene767636772310
mRNA767636772310
exon767636768049
exon768259768398
exon768556768761
exon769071769177
exon769374769553
exon770570770597
exon770683770728
exon770840772310
CDS767747768049
CDS768259768398
CDS768556768761
CDS769071769177
CDS769374769553
CDS770570770597
CDS770683770728
CDS770840770909

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04055.20Radical_SAM71229
PF06968.12BATS243333

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Biotin metabolismbiotin synthase [EC:2.8.1.6]ko00780K01012

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004076biotin synthase activity
GO:0009102biotin biosynthetic process
GO:0051186cofactor metabolic process
GO:0051536iron-sulfur cluster binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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