PH01000162G0340's details annotation
1.Annotation
ICBR annotation: AML1, putative, expressed
Blast result AT5G61960 : 5.00E-111
Blast annotation: MEI2-like protein 1
2.Location
Scaffold: PH01000162
Strand: +
| Region | Start | End |
| gene | 262045 | 267173 |
| mRNA | 262045 | 267173 |
| exon | 262045 | 262505 |
| exon | 263400 | 264051 |
| exon | 264157 | 264241 |
| exon | 264333 | 264401 |
| exon | 264566 | 264745 |
| exon | 265895 | 267173 |
| CDS | 262298 | 262505 |
| CDS | 263400 | 264051 |
| CDS | 264157 | 264241 |
| CDS | 264333 | 264401 |
| CDS | 264566 | 264745 |
| CDS | 265895 | 266050 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04059.11 | RRM_2 | 276 | 372 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.