PH01000162G0880's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Blast result AT5G22030 : 4.00E-104
Blast annotation: ubiquitin-specific protease 8
2.Location
Scaffold: PH01000162
Strand: +
| Region | Start | End |
| gene | 627813 | 631911 |
| mRNA | 627813 | 631911 |
| exon | 627813 | 628288 |
| exon | 628379 | 628524 |
| exon | 628737 | 629294 |
| exon | 629518 | 629791 |
| exon | 629968 | 630022 |
| exon | 630205 | 630284 |
| exon | 631376 | 631555 |
| exon | 631700 | 631911 |
| CDS | 628139 | 628288 |
| CDS | 628379 | 628524 |
| CDS | 628737 | 629294 |
| CDS | 629518 | 629791 |
| CDS | 629968 | 630022 |
| CDS | 630205 | 630284 |
| CDS | 631376 | 631555 |
| CDS | 631700 | 631861 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001313 | spliceosomal complex, aminopeptidase activity, ubiquitin thiolesterase activity, nuclear mRNA splicing, via spliceosome, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 163 | 397 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.