PH01000162G1160's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G54750 : 8.10E-74
Blast annotation: -
2.Location
Scaffold: PH01000162
Strand: +
| Region | Start | End |
| gene | 789881 | 795231 |
| mRNA | 789881 | 795231 |
| exon | 789881 | 790172 |
| exon | 790754 | 790827 |
| exon | 790906 | 791023 |
| exon | 791150 | 791232 |
| exon | 791324 | 791489 |
| exon | 791563 | 791762 |
| exon | 792184 | 792395 |
| exon | 792746 | 792784 |
| exon | 792941 | 793059 |
| exon | 793576 | 793677 |
| exon | 793769 | 793867 |
| exon | 794439 | 794641 |
| exon | 794718 | 795231 |
| CDS | 790071 | 790172 |
| CDS | 790754 | 790827 |
| CDS | 790906 | 791023 |
| CDS | 791150 | 791232 |
| CDS | 791324 | 791489 |
| CDS | 791563 | 791762 |
| CDS | 792184 | 792395 |
| CDS | 792746 | 792784 |
| CDS | 792941 | 793059 |
| CDS | 793576 | 793677 |
| CDS | 793769 | 793867 |
| CDS | 794439 | 794641 |
| CDS | 794718 | 794919 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.