PH01000162G1410's details annotation
1.Annotation
ICBR annotation: cysteine synthase, putative, expressed
Blast result AT4G14880 : 1.00E-142
Blast annotation: O-acetylserine (thiol) lyase (OAS-TL) isoform A1
2.Location
Scaffold: PH01000162
Strand: -
| Region | Start | End |
| gene | 986851 | 992196 |
| mRNA | 986851 | 992196 |
| exon | 986851 | 987009 |
| exon | 987309 | 987389 |
| exon | 987536 | 987595 |
| exon | 987811 | 987890 |
| exon | 988353 | 988404 |
| exon | 988502 | 988639 |
| exon | 988733 | 988996 |
| exon | 990584 | 990641 |
| exon | 991132 | 991355 |
| exon | 991453 | 992196 |
| CDS | 986917 | 987009 |
| CDS | 987309 | 987389 |
| CDS | 987536 | 987595 |
| CDS | 987811 | 987890 |
| CDS | 988353 | 988404 |
| CDS | 988502 | 988639 |
| CDS | 988733 | 988996 |
| CDS | 990584 | 990641 |
| CDS | 991132 | 991355 |
| CDS | 991453 | 991494 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00291.24 | PALP | 13 | 297 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Sulfur metabolism | cysteine synthase A [EC:2.5.1.47] | ko00920 | K01738 |
| Cysteine and methionine metabolism | cysteine synthase A [EC:2.5.1.47] | ko00270 | K01738 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004124 | cysteine synthase activity |
| GO:0006535 | cysteine biosynthetic process from serine |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.