PH01000164G0470's details annotation
1.Annotation
ICBR annotation: Complex I intermediate-associated protein 30 domain containing protein, putative, expressed
Blast result AT1G16720 : 0.00E+00
Blast annotation: high chlorophyll fluorescence phenotype 173
2.Location
Scaffold: PH01000164
Strand: +
| Region | Start | End |
| gene | 235788 | 239945 |
| mRNA | 235788 | 239945 |
| exon | 235788 | 236140 |
| exon | 237008 | 237220 |
| exon | 237332 | 237536 |
| exon | 237651 | 237726 |
| exon | 237832 | 237967 |
| exon | 238074 | 238178 |
| exon | 238287 | 238364 |
| exon | 238577 | 238666 |
| exon | 238753 | 238818 |
| exon | 239117 | 239173 |
| exon | 239271 | 239348 |
| exon | 239458 | 239505 |
| exon | 239621 | 239945 |
| CDS | 235877 | 236140 |
| CDS | 237008 | 237220 |
| CDS | 237332 | 237536 |
| CDS | 237651 | 237726 |
| CDS | 237832 | 237967 |
| CDS | 238074 | 238178 |
| CDS | 238287 | 238364 |
| CDS | 238577 | 238666 |
| CDS | 238753 | 238818 |
| CDS | 239117 | 239173 |
| CDS | 239271 | 239348 |
| CDS | 239458 | 239505 |
| CDS | 239621 | 239692 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13460.5 | NAD_binding_10 | 67 | 158 |
| PF08547.11 | CIA30 | 214 | 310 |
| PF13460.5 | NAD_binding_10 | 355 | 447 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.