PH01000164G0490's details annotation
1.Annotation
ICBR annotation: CRS2-associated factor 2, mitochondrial precursor, putative, expressed
Blast result AT5G54890 : 1.10E-71
Blast annotation: RNA-binding CRS1 / YhbY (CRM) domain-containing protein
2.Location
Scaffold: PH01000164
Strand: -
| Region | Start | End |
| gene | 242321 | 246831 |
| mRNA | 242321 | 246831 |
| exon | 242321 | 242479 |
| exon | 242612 | 242727 |
| exon | 242912 | 243129 |
| exon | 243554 | 243622 |
| exon | 244375 | 244502 |
| exon | 244629 | 244844 |
| exon | 245645 | 246831 |
| CDS | 242466 | 242479 |
| CDS | 242612 | 242727 |
| CDS | 242912 | 243129 |
| CDS | 243554 | 243622 |
| CDS | 244375 | 244502 |
| CDS | 244629 | 244844 |
| CDS | 245645 | 246137 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01985.20 | CRS1_YhbY | 215 | 280 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.