PH01000164G0630's details annotation
1.Annotation
ICBR annotation: OsSPL12 - SBP-box gene family member, expressed
Blast result AT5G43270 : 2.00E-51
Blast annotation: squamosa promoter binding protein-like 2
2.Location
Scaffold: PH01000164
Strand: +
| Region | Start | End |
| gene | 350904 | 356523 |
| mRNA | 350904 | 356523 |
| exon | 350904 | 352160 |
| exon | 352686 | 352825 |
| exon | 353539 | 353808 |
| exon | 354813 | 356523 |
| CDS | 351499 | 352160 |
| CDS | 352686 | 352825 |
| CDS | 353539 | 353808 |
| CDS | 354813 | 355117 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | phe-miR156b | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SBP |
| Transcription_Regulator(from PlantTFDB) | SBP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03110.13 | SBP | 180 | 253 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.