PH01000164G1140's details annotation
1.Annotation
ICBR annotation: 60S acidic ribosomal protein, putative, expressed
Blast result AT5G57290 : 3.60E-21
Blast annotation: 60S acidic ribosomal protein family
2.Location
Scaffold: PH01000164
Strand: +
| Region | Start | End |
| gene | 776305 | 779209 |
| mRNA | 776305 | 779209 |
| exon | 776305 | 776610 |
| exon | 778122 | 779209 |
| CDS | 776413 | 776610 |
| CDS | 778122 | 778289 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000369 | translational elongation, Ribosome Ribosome structural constituent of ribosome, intracellular, ubiquitin thiolesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00428.18 | Ribosomal_60s | 74 | 120 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein LP1 | ko03011 | K02942 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006414 | translational elongation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.