Gene details

Annotation of co-expression genes

PH01000165G0920's details annotation

1.Annotation

ICBR annotation: polygalacturonase, putative, expressed

Blast result AT1G80170 : 6.60E-36
Blast annotation: Pectin lyase-like superfamily protein

2.Location

Scaffold: PH01000165
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000006	CAMK_CDPK (from iTAK) transporter activity, transport, transmembrane transport, polygalacturonase activity,
coexpression network	CFinderM000439	polygalacturonase activity, nucleosome assembly,
coexpression network	CFinderM001597	Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism phosphatidylinositol metabolic process, phosphatidylinositol phosphate kinase activity, Phagosome cellular protein metabolic process, C3H Transcription_Regulator(from PlantTFDB) membrane,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00295.16	Glyco_hydro_28	7	159

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0004650	polygalacturonase activity
GO:0005975	carbohydrate metabolic process

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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