PH01000165G0980's details annotation 1.Annotation ICBR annotation: polygalacturonase, putative, expressed
Blast result AT1G80170 : 1.00E-109 Blast annotation: Pectin lyase-like superfamily protein 2.Location Scaffold: PH01000165 Strand: - Region | Start | End | gene | 593209 | 596825 | mRNA | 593209 | 596825 | exon | 593209 | 593820 | exon | 594299 | 594415 | exon | 594523 | 594631 | exon | 594728 | 594809 | exon | 595193 | 595400 | exon | 595506 | 595532 | exon | 595643 | 595813 | exon | 595900 | 596031 | exon | 596120 | 596825 | CDS | 593524 | 593820 | CDS | 594299 | 594415 | CDS | 594523 | 594631 | CDS | 594728 | 594809 | CDS | 595193 | 595400 | CDS | 595506 | 595532 | CDS | 595643 | 595813 | CDS | 595900 | 596031 | CDS | 596120 | 596275 |
UCSC genome browser 3.Network  4.Functional module Method | Module ID | Function Annotation | coexpression network | CFinderM000784 | carbohydrate metabolic process, GH3 Glycoside_Hydrolases hydrolase activity, hydrolyzing O-glycosyl compounds, integral to membrane, polygalacturonase activity,
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5.Cis-elements Details in 3kb promoter region 6.Expression profilings
7.Gene family
8.Protein domain Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start | PF00295.16 | Glyco_hydro_28 | 62 | 393 |
9.KEGG Pathway Pathway | KEGG Ortholog | Pathway ID | KO | null | null | null | null |
10.Gene Ontology GO Accession | GO Annotation | GO:0004650 | polygalacturonase activity | GO:0005975 | carbohydrate metabolic process |
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