PH01000165G1120's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L28-1, putative, expressed
Blast result AT2G19730 : 5.30E-37
Blast annotation: Ribosomal L28e protein family
2.Location
Scaffold: PH01000165
Strand: +
| Region | Start | End |
| gene | 680916 | 686465 |
| mRNA | 680916 | 686465 |
| exon | 680916 | 681666 |
| exon | 681760 | 681926 |
| exon | 683313 | 683873 |
| exon | 685935 | 686465 |
| CDS | 681519 | 681666 |
| CDS | 681760 | 681926 |
| CDS | 683313 | 683873 |
| CDS | 685935 | 686063 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01778.16 | Ribosomal_L28e | 8 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.