PH01000166G1030's details annotation
1.Annotation
ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed
Blast result AT1G06490 : 0.00E+00
Blast annotation: glucan synthase-like 7
2.Location
Scaffold: PH01000166
Strand: +
| Region | Start | End |
| gene | 767709 | 783071 |
| mRNA | 767709 | 783071 |
| exon | 767709 | 770084 |
| exon | 772024 | 772141 |
| exon | 772340 | 772457 |
| exon | 772894 | 772954 |
| exon | 774996 | 775082 |
| exon | 775171 | 775278 |
| exon | 775400 | 775488 |
| exon | 775561 | 775642 |
| exon | 775729 | 775889 |
| exon | 776014 | 776140 |
| exon | 776239 | 776342 |
| exon | 776413 | 776503 |
| exon | 776729 | 776761 |
| exon | 777055 | 777184 |
| exon | 777275 | 777397 |
| exon | 777482 | 777547 |
| exon | 777631 | 777817 |
| exon | 777904 | 778015 |
| exon | 778329 | 778451 |
| exon | 779073 | 779191 |
| exon | 779294 | 779377 |
| exon | 780331 | 780443 |
| exon | 780520 | 780749 |
| exon | 781147 | 781944 |
| exon | 782041 | 782091 |
| exon | 782174 | 782359 |
| exon | 782643 | 783071 |
| CDS | 769782 | 770084 |
| CDS | 772024 | 772141 |
| CDS | 772340 | 772457 |
| CDS | 772894 | 772954 |
| CDS | 774996 | 775082 |
| CDS | 775171 | 775278 |
| CDS | 775400 | 775488 |
| CDS | 775561 | 775642 |
| CDS | 775729 | 775889 |
| CDS | 776014 | 776140 |
| CDS | 776239 | 776342 |
| CDS | 776413 | 776503 |
| CDS | 776729 | 776761 |
| CDS | 777055 | 777184 |
| CDS | 777275 | 777397 |
| CDS | 777482 | 777547 |
| CDS | 777631 | 777817 |
| CDS | 777904 | 778015 |
| CDS | 778329 | 778451 |
| CDS | 779073 | 779191 |
| CDS | 779294 | 779377 |
| CDS | 780331 | 780443 |
| CDS | 780520 | 780749 |
| CDS | 781147 | 781944 |
| CDS | 782041 | 782091 |
| CDS | 782174 | 782359 |
| CDS | 782643 | 782885 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000884 | Protein_processing_in_endoplasmic_reticulum GT48 GlycosylTransferases HB-other Transcription_Regulator(from PlantTFDB) HD-ZIP Transcription_Regulator(from PlantTFDB) Nucleotide_excision_repair proteasomal ubiquitin-dependent protein catabolic process, outer membrane-bounded periplasmic space, 1,3-beta-D-glucan synthase complex, (1->3)-beta-D-glucan biosynthetic process, nucleotide-excision repair, |
| coexpression network | CFinderM001388 | Protein_processing_in_endoplasmic_reticulum GT48 GlycosylTransferases Nucleotide_excision_repair outer membrane-bounded periplasmic space, 1,3-beta-D-glucan synthase complex, proteasomal ubiquitin-dependent protein catabolic process, (1->3)-beta-D-glucan biosynthetic process, nucleotide-excision repair, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) glycerol ether metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT48 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02364.14 | Glucan_synthase | 557 | 1160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000148 | 1,3-beta-D-glucan synthase complex |
| GO:0003676 | nucleic acid binding |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
| GO:0006075 | (1->3)-beta-D-glucan biosynthetic process |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.