PH01000168G1040's details annotation
1.Annotation
ICBR annotation: ribosomal protein, putative, expressed
Blast result AT2G33800 : 3.60E-59
Blast annotation: Ribosomal protein S5 family protein
2.Location
Scaffold: PH01000168
Strand: +
| Region | Start | End |
| gene | 816624 | 818953 |
| mRNA | 816624 | 818953 |
| exon | 816624 | 818953 |
| CDS | 818105 | 818815 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00333.19 | Ribosomal_S5 | 167 | 231 |
| PF03719.14 | Ribosomal_S5_C | 245 | 314 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S5 | ko03011 | K02988 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015935 | small ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.