PH01000170G0210's details annotation
1.Annotation
ICBR annotation: transporter, major facilitator family, putative, expressed
Blast result AT2G16990 : 5.50E-90
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000170
Strand: -
| Region | Start | End |
| gene | 124933 | 132240 |
| mRNA | 124933 | 132240 |
| exon | 124933 | 125129 |
| exon | 125220 | 125290 |
| exon | 125445 | 125523 |
| exon | 125636 | 125677 |
| exon | 125774 | 125827 |
| exon | 125914 | 125946 |
| exon | 126042 | 126122 |
| exon | 126232 | 126318 |
| exon | 126506 | 126626 |
| exon | 127263 | 127468 |
| exon | 127566 | 127688 |
| exon | 129525 | 129637 |
| exon | 129737 | 129848 |
| exon | 131338 | 132240 |
| CDS | 125001 | 125129 |
| CDS | 125220 | 125290 |
| CDS | 125445 | 125523 |
| CDS | 125636 | 125677 |
| CDS | 125774 | 125827 |
| CDS | 125914 | 125946 |
| CDS | 126042 | 126122 |
| CDS | 126232 | 126318 |
| CDS | 126506 | 126626 |
| CDS | 127263 | 127468 |
| CDS | 127566 | 127688 |
| CDS | 129525 | 129637 |
| CDS | 129737 | 129848 |
| CDS | 131338 | 131502 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000976 | acid-amino acid ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07690.15 | MFS_1 | 11 | 398 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.