Annotation of co-expression genes

PH01000170G0600's details annotation

1.Annotation

ICBR annotation: exostosin family domain containing protein, expressed

Blast result AT2G28110 : 9.00E-133
Blast annotation: Exostosin family protein

2.Location

Scaffold: PH01000170
Strand: -

RegionStartEnd
gene366236368796
mRNA366236368796
exon366236366778
exon367160367404
exon367880368796
CDS366307366778
CDS367160367404
CDS367880368470

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000253GT47 GlycosylTransferases
sialyltransferase activity,
Mismatch_repair
mismatched DNA binding,
protein glycosylation,
DNA_replication
coexpression networkCFinderM000254GNAT Transcription_Regulator(from iTAK)
GT47 GlycosylTransferases
HSF Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001365HSF Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
GT47 GlycosylTransferases
coexpression networkCFinderM001873GT47 GlycosylTransferases

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT47

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03016.14Exostosin79375

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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