Annotation of co-expression genes

PH01000170G0650's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT2G27900 : 2.00E-139
Blast annotation: -

2.Location

Scaffold: PH01000170
Strand: +

RegionStartEnd
gene398867406518
mRNA398867406518
exon398867399516
exon399612399773
exon399858399932
exon400267400345
exon401186401253
exon401516401602
exon401852401935
exon402276402313
exon402688402820
exon403351403794
exon404324404826
exon404913404976
exon405082405184
exon405304406518
CDS399268399516
CDS399612399773
CDS399858399932
CDS400267400345
CDS401186401253
CDS401516401602
CDS401852401935
CDS402276402313
CDS402688402820
CDS403351403794
CDS404324404826
CDS404913404976
CDS405082405184
CDS405304405587

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000762Endocytosis
phospholipid transport,
regulation of ARF protein signal transduction,
membrane coat,
clathrin adaptor complex,
coexpression networkCFinderM000894regulation of ARF protein signal transduction,
phospholipid transport,
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF10475.8Vps54_N127188
PF10475.8Vps54_N189269
PF10475.8Vps54_N280320

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.