PH01000170G1070's details annotation
1.Annotation
ICBR annotation: glutamyl-tRNA synthetase, putative, expressed
Blast result AT5G64050 : 1.50E-42
Blast annotation: glutamate tRNA synthetase
2.Location
Scaffold: PH01000170
Strand: +
| Region | Start | End |
| gene | 707472 | 712157 |
| mRNA | 707472 | 712157 |
| exon | 707472 | 708419 |
| exon | 708528 | 708602 |
| exon | 708751 | 708940 |
| exon | 709184 | 709305 |
| exon | 709523 | 709732 |
| exon | 710125 | 710177 |
| exon | 710997 | 711049 |
| exon | 711825 | 712157 |
| CDS | 707643 | 708419 |
| CDS | 708528 | 708602 |
| CDS | 708751 | 708940 |
| CDS | 709184 | 709305 |
| CDS | 709523 | 709732 |
| CDS | 710125 | 710177 |
| CDS | 710997 | 711049 |
| CDS | 711825 | 711955 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000012 | glutamyl-tRNA aminoacylation, tRNA aminoacylation, glutamate-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00749.20 | tRNA-synt_1c | 292 | 405 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0004818 | glutamate-tRNA ligase activity |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006424 | glutamyl-tRNA aminoacylation |
| GO:0016876 | ligase activity, forming aminoacyl-tRNA and related compounds |
| GO:0043039 | tRNA aminoacylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.